I use this page to keep track of available open source tools for biomedical image analysis, e.g. registration, segmentation, pre-processing, etc..
- Four toolsets developed by Andriy Myronenko, Link
- COPAP: Cyclic Order Preserving Assignment Problem, Link
- A good platform for comparing multiple level set methods, Link
- ilastik, Link
- A better matlab routine for computing region centerline, Link
- Bresenham algorithm (computing the grid coordinates of points alongs the line connecting two given points) in Matlab, Link
- Frangi filter (computing vesselness) in Matlab, Link
- A nice implementation of 2D/3D Snake, Link